Thursday, September 1, 2016

INSTITUTION OF INTER PARTES REVIEWS (IPR) FOR BIOLOGICAL PATENTS

INSTITUTION OF INTER PARTES REVIEWS (IPR) FOR BIOLOGICAL PATENTS
By: Payam Moradian on July 27, 2016 

            A notable change in recent years in U.S. patent practice has been the institution of the Inter Partes Review procedure (IPR), which so far has resulted in a high number of U.S. patents being invalidated by the Patent Trial and Appeal Board (PTAB). Another recent development has been the Biologics Price Competition and Innovation Act (BPCIA), under which a biological product may be demonstrated to be “biosimilar” to an already-approved biological product.  
            Spurred by the BPCIA, pharmaceutical companies seeking to market biosimilars have petitioned the PTAB to institute an IPR for biological patents.  An IPR was instituted in approximately half of the cases pertaining to biological patents (without taking into account related proceedings/patents) that were reviewed for this article, for an overall institution rate of approximately 50%.  The approximately 50% institution rate is lower than the 70% institution rate for all patents.[1] [2]

IPR2015-01624
Patent 6,331,415
IPR2015-00415
Patent 7,820,161
IPR2015-00417
Patent 7,976,838
IPR2015-01792
Patent 8,163,522
IPR2015-00418
Patent 8,329,172
IPR2015-01537
Patent 8.476,239
IPR2016-00172
Patent 8,889,135
IPR2015-01514
Patent 8,916,157

Instituted
all claims
Yes

Yes


Yes


Instituted
Some claims

Yes






Not Instituted
See related IPR below


Yes
Yes

Yes
Yes
Secondary considerations accepted

No
No
Yes


No

Prior
 re-exam
Yes







Related IPRs
IPR2016-00460
IPR2016-00383
(Not Instituted)

IPR2016-00710

IPR2015-01744

IPR2015-01733




IPR2016-00408

IPR2016-00409

(IPR2016-00189
Patent 9,073,987)

(IPR2016-00188
Patent 9,017,680)

IPR2015-01517
Patent 8,916,158
(Not Instituted)


            In the first instance[3] where an IPR was not instituted, the claimed formulation was to a stabilized liquid antibody formulation:
1. A stable liquid aqueous pharmaceutical formulation
comprising
(a) a human IgG1[1] anti-human Tumor Necrosis Factor alpha
(TNFα) antibody, or an antigen-binding portion thereof, at a
concentration of 20 to 150 mg/ml,
(b) a tonicity agent,
(c) a surfactant, and
(d) a buffer system having a pH of 4.0 to 8.0,
wherein the antibody comprises the light chain variable region
and the heavy chain variable region of D2E7.

[4]The petitioner cited to a prior art antibody formulation that was lyophilized and not stable when combined with water, or low-concentration (10 mg/ml or less) liquid formulations.[5]  The patent holder argued that the prior art cited by the petitioner pointed to the unpredictability of making suitable stabilized formulations of antibodies, to the extent that the petitioner had relied on the same prior art as evidence of unpredictability in the art during prosecution of petitioner’s own protein formulation patent applications.[6]  Agreeing with the patent holder, the PTAB did not institute an IPR since “the prior art [did not provide] sufficient guidance such that a skilled artisan would have had a reasonable expectation of success in arriving at the formulation of stable, liquid pharmaceutical compositions comprising antibodies at a concentration of 20 to 150 mg/ml.”[7] 
            In the second instance where an IPR was not instituted, the claim of the patent was directed to a method for making a fusion protein of a TNF receptor with all the domains of the constant region of an antibody “other than the first domain of said constant region:”
1. A method comprising the steps of:
(a) culturing a host cell comprising a polynucleotide, wherein the polynucleotide encodes a protein consisting of:
            (i) the extracellular region of an insoluble human TNF receptor, wherein the insoluble human TNF receptor has an apparent molecular weight of about 75 kilodaltons as determined on a non-reducing SDS-polyacrylamide gel and comprises the amino acid sequence
LPAQVAFXPYAPEPGSTC (SEQ ID NO: 10), and
            (ii) all of the domains of the constant region of a human IgG immunoglobulin heavy chain other than the first domain of said constant region, and
(b) purifying an expression product of the polynucleotide from the cell mass or the culture medium.

(emphasis added) [8] [9]  The “Patent Owner offered expert testimony as to the unexpected results of improved TNF binding affinity, potency, kinetic stability, and reduced antibody effector function and aggregation ability.”[10]  According to the PTAB, the prior art did “not point to selective deletion of the CH1 domain to achieve any enhanced binding affinity.”[11] 
            In the third instance where an IPR was not instituted, the patent claimed a method of treating low grade B-cell non-Hodgkin’s lymphoma (NHL):
A method of treating low grade B-cell non-Hodgkin’s lymphoma in a human patient comprising administering to the patient chemotherapy consisting of CVP therapy to which the patient responds, followed by rituximab maintenance therapy, wherein the maintenance therapy comprises four weekly administrations of rituximab at a dose of 375 mg/m2 every 6 months, and wherein the maintenance therapy is provided for 2 years.
[12] [13]  The PTAB found that the prior art relied on by the petitioner differed in at least three respects: by treating patients with intermediate grade NHL (IG-NHL), rather than the low grade NHL (LG-NHL), not teaching rituximab maintenance therapy following CVP induction therapy, and being silent as to the dosing for maintenance therapy.
            In the fourth instance, the PTAB did not institute an IPR against some of the claims of a patent based on two separate grounds.[14]  The first ground[15] was that the prior art did not teach “administer[ing] more than one intravenous dose of a therapeutically effective amount of rituximab in combination with the corticosteroid-methotrexate combination.”[16]  The second ground[17] was that the prior art did not teach “administering an initial dose of the rituximab followed by a subsequent dose, where the mg/m2 dose of the rituximab in the subsequent dose exceeds the mg/m2 dose of the rituximab in the initial dose.”[18] 
            Interestingly, the PTAB decided to institute an IPR in one proceeding against Genentech’s Cabilly patent (which claims expression of a light and a heavy chain of an antibody separately in a single host cell), stating that the prior art “suggests the incorporation of a plurality of structural genes encoding for the subunits of a multimeric protein, such as immunoglobulin heavy and light chains, within a vector that would be placed in a single host cell,”[19] while in another IPR, the PTAB did not institute an IPR against the same patent, stating that “[n]either Petitioner nor its expert explain how the ordinary artisan would envision the expression of an immunoglobulin heavy and light chain DNA sequences after reading Salser disclosure of the beta-globin gene cluster, which results in the expression of five separate polypeptides at different times.”[20]  The PTAB’s opposite decisions regarding the same patent signify the importance of choosing the correct prior art for an IPR petition, and that PTAB’s refusal to institute IPR based on one set of prior art does not necessarily bar it from instituting an IPR based on another set of prior art.
            Regardless of the above refusals to institute an IPR, the PTAB has generally held different dosages and formulations to be obvious in instituting several IPRs.  For example, in one IPR,[21] the PTAB found each of the following limitations for an antibody formulation to be taught or suggested by the prior art:
[1] at least 100mg/ml CTLA4Ig molecule,
[2] a sugar selected from the group consisting of sucrose, lactose, maltose, mannitol and trehalose and mixtures thereof and
[3] a pharmaceutically acceptable aqueous carrier, wherein the formulation has a
[4] pH range of from 6 to 8 and
[5] a viscosity of from 9 to 20 cps, and
[6] the weight ratio of sugar:protein is 1.1:1 or higher.

The PTAB rationalized that since the prior art “teaches a specific dosage of CTLA4Ig . . . it is reasonably likely that those of ordinary skill in the art would have been able to determine an effective concentration for a subcutaneously administered formulation from that dosage.”[22]
            With biosimilars, there is often a successful blockbuster drug that a patent owner tries to rely on for a showing of secondary considerations, particularly commercial success.  However, on three separate occasions the PTAB has dismissed the patent holder’s alleged secondary considerations based on a blockbuster drug.  In one IPR where the claim of the patent was “administering subcutaneously to a human subject having rheumatoid arthritis a total body dose of 40 mg of a human anti-TNFα antibody once every 13-15 days,” the PTAB found the commercial success of the drug HUMIRA® not to be commensurate with the scope of the claimed invention:
The record before us at this time, however, indicates that the commercial success of HUMIRA® is not commensurate in scope with the claimed invention—40 mg subcutaneous, every-other week administration to treat RA. For example, although the evidence Patent Owner presents attributes the overall sales of HUMIRA® in part to subcutaneous, biweekly flat dosing, there appears to be little indication that sales are due to the 40 mg dose amount recited in the claims. 
Moreover, evidence cited by Patent Owner also attributes overall sales of HUMIRA® to the fully human D2E7 anti-TNFα antibody, which was known in the prior art. Patent Owner’s evidence further indicates that HUMIRA® has been FDA-approved and “has enjoyed success” in treating autoimmune diseases other than the recited RA, such as psoriatic arthritis, and intestinal disorders, such as Crohn’s disease, since October 2005 and February 2007, respectively. Accordingly, at this stage of the proceeding, the arguments and information of record do not persuade us to decline to go forward with a trial.
[23]Yet in another IPR, where the claim was to “a method of treating rheumatoid arthritis,” the PTAB dismissed the commercial success of the drug rituximab since the patent owner could not precisely determine the sales split between RITUXAN® use in oncology and immunology settings:
Patent Owner asserts that the claimed methods have led to significant commercial success, based on worldwide sales of rituximab.  The overall sales, however, are described as being attributable to the use of rituximab in oncology, e.g., to treat non-Hodgkin’s lymphoma, as well as to its use in immunology.   (“It remains difficult to precisely determine the sales split between Rituxan use in oncology and immunology settings.”). As such, Patent Owner has failed, on the current record, to establish sufficient nexus between the commercial success of the product and any element recited in the claims.
[24]  Reliance on RITUXAN® for secondary considerations was also dismissed by the PTAB for a patent in which the claim recited a method of treating rheumatoid arthritis in a human with the combination of rituximab and methotrexate, with the PTAB taking the position that the result of the claimed method was not unexpected compared with the closest prior art:
Patent Owner also asserts that the claimed treatment methods produce unexpected results. In support of this assertion, Patent Owner refers to the Edwards 2004 study demonstrating that “the claimed combination of rituximab with methotrexate provided greater therapeutic effects than rituximab alone in patients who ‘had active rheumatoid arthritis despite [prior] treatment with methotrexate.” The conclusions of the study, however, were that significant improvement in disease symptoms were observed in patients administered rituximab “alone or in combination with either cyclophosphamide or continued methotrexate.” In other words, in all groups treated with rituximab, alone or in combination, significant improvement in disease symptoms occurred. Patent Owner has not explained sufficiently how these results establish that the results of the claimed method were unexpected compared with the closest prior art.
[25]In the IPR in which the PTAB accepted the secondary considerations, the secondary consideration was improved binding affinity and other properties resulting from fusion of a TNF receptor to an antibody constant region lacking the first domain of the constant region.[26]  In denying the petition to institute an IPR, the PTAB noted that the petitioner had not addressed the secondary considerations that the patent holder had relied on before the Patent Office during prosecution to obtain the patent:
During the prosecution of the ’522 patent, Patent Owner offered expert testimony concerning the unexpected results of improved TNF binding affinity, potency, kinetic stability, and reduced antibody effect or function and aggregation ability.  We agree with Patent Owner that the unrebutted objective indicia of nonobviousness presented in the prosecution history of the ’522 patent, and apparently relied upon by the Examiner, at least in part, in allowing the claims of the ’522 patent, see Ex. 1026, 6, supports the nonobviousness of the challenged claims. The Petition, moreover, should have addressed the evidence of unexpected results as part of Petitioner’s showing of a reasonable likelihood of success on the merits.
[27]The PTAB’s refusal to institute an IPR in this case underlies the importance of addressing in an IPR petition any secondary considerations relied on by a patent holder during prosecution. 
            The PTAB seems to exercise its discretion in instituting an IPR despite prior proceedings in which similar issues were raised.  Notably the PTAB instituted an IPR against Genentech’s Cabilly patent.  The PTAB instituted the IPR regardless of the past reexamination proceeding since “the particular combination of references upon which we institute were not previously addressed during prosecution or reexamination.”[28]  In other instances, the PTAB instituted IPRs despite the same arguments being raised in prosecution of the same or related application.[29] 
            In summary, an IPR was instituted in approximately half of the cases (without taking into account related proceedings/patents).  A patent holder’s reliance on secondary considerations based on the sales of a blockbuster drug or decisions in prior proceedings seem not to be a factor in PTAB’s decision to institute an IPR.  The PTAB seems to give weigh to secondary considerations relied on during prosecution and evidence as to unpredictability in the prior art relating to biologic inventions.  The PTAB also scrutinizes in great detail alleged prior teachings in the prior art set out by a petitioner. 



[1] <https://www.rpxcorp.com/2015/10/19/rising-and-falling-iprs-at-institution/> Accessed June 30, 2016.
[2] In addition to these IPRs, there is a pending IPR (IPR2016-01018) petition for U.S. Patent 9,114,166, which the PTAB has not yet made a decision on.  Related IPRs have been grouped together. 
[3] IPR2015-01514.
[4] Id., Paper No. 9, at 3.
[5] Id. at 13.
[6] Id. at 14.
[7] Id.
[8] IPR2015-01792, Paper No. 14, at 3.
[9] The PTAB construed “all of the domains of the constant region of a human IgG immunoglobulin heavy chain other than the first domain of said constant region” to mean “‘-hinge-CH2-CH3’ region of a human IgG immunoglobulin
heavy chain,” and “all of the domains of the constant region of a human IgG1 immunoglobulin heavy chain other than the first domain of said constant region” to mean “’-hinge-CH2-CH3’ region of a human IgG1
immunoglobulin heavy chain.”  Id. at 7. 
[10] Id. at 18. 
[11] Id. at 17.
[12] IPR2015-00418, Paper No. 14, at 4.
[13] CVP therapy is a combination of the drugs cyclophosphamide, vincristine, and prednisone, which is sometimes referred to as “COP” because the drug vincristine is also known as oncovin.
[14] IPR2015-00415.
[15] For dependent claims 3, 7, and 11.
[16] Id., Paper No. 13, at 25.
[17] For dependent claims 4, 8, and 12.
[18] Id. at 26.
[19] IPR2015-01624, Paper No. 15, at 18-19.
[20] IPR2016-00383, Paper No. 16, at 19.
[21] IPR2015-01537
[22] Id., at 10.
[23] IPR2016-00172, Paper No. 9, at 21-22.
[24] IPR2015-00417, Paper No. 11, at 25.
[25] IPR2015-00415, Paper No. 13, at 28-29.
[26] IPR2015-01792, Paper No. 14, at 18.
[27] Id
[28] IPR2015-01624, Paper No. 15, at 24.
[29] IPR2016-00172, Paper No. 9, at10.

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